Selected Publications

2024 First Rider, D.,Crop Eared Wolf, A., Murray, J., de Flamingh, A., Campelo dos Santos, A., Lanoë, F., Zedeño, M., DeGiorgio, M.*, Lindo, J.*, Malhi, R.* “Genomic analyses correspond with deep persistence of peoples of Blackfoot Confederacy from glacial times.” Science Advances.10,eadl6595(2024).DOI:10.1126/sciadv.adl6595

2023 Yemko Pryor and John Lindo, “Deconstructing Eurocentrism in skin pigmentation research via the incorporation of diverse populations and theoretical perspectives.” Evolutionary Anthropology https://doi.org/10.1002/evan.21993

2023 Capodiferro, M.,  Osorio, A., Rambaldi Migliore, N., Tineo, D., Raveane, A., Xavier, C., Bodner, M., Simão, F., Ongaro, L., Montinaro, F., Lindo, J., Huerta-Sanchez, E., Politis, G., Barbieri, C., Parson, W., Gusmão, L., Achilli, A. “The multifaceted genomic history of Ashaninka from Amazonian Peru.”  Current Biology 33, 1-9.

2023 Joseph, S., Migliore, N., Olivieri, A., Torroni, A., Owings, A., DeGiorgio, M., Ordóñez, W., Ortiz Aguilú, J.J., González-Andrade, F., Achilli, A., Lindo, J.* “Genomic evidence for adaptation to tuberculosis in the Andes before European contact.” iScience (2023), doi: https://doi.org/10.1016/j.isci.2023.106034

2022 Campelo dos Santos AL, Lavalle Sullasi H, Gokcumen O, Lindo J, DeGiorgio, M. “Spatiotemporal fluctuations of population structure in the Americas revealed by a meta-analysis of the first decade of archaeogenomes.” American Journal of Biological Anthropology, 2022;1– 12.

2022 Campelo dos Santos AL, Owings A, Sullasi HSL, Gokcumen O, DeGiorgio M, Lindo J.* “Genomic evidence for ancient human migration routes along South America’s Atlantic coast.” Proc. R. Soc. B 289: 20221078. https://doi.org/10.1098/rspb.2022.1078

2022 Joseph, S. and Lindo, J. The evolutionary history of infectious disease in the ancient Americas and the pathogenic consequences of European contact. American Journal of Biological Anthropology, 1– 10. https://doi.org/10.1002/ajpa.24595.

2022 Lindo, J. De La Rosa, R. Luiz Campelo dos Santos, A., Sans, M., DeGiorgio, M., Figueiro, G. The genomic prehistory of the Indigenous peoples of Uruguay. PNAS Nexus, pgac047

2021 Lee, M., Lindo, J., S., Rilling, Exploring gene-culture coevolution in humans by inferring neuroendophenotypes: A case study of the oxytocin receptor gene and cultural tightness. Gene, Brain, and Behavior, 2021;e12783.

2021 John Lindo and Michael DeGiorgio. Understanding the Adaptive Evolutionary Histories of South American Ancient and Present-Day Populations via Genomics. Genes 2021, 12, 360.

2020 Sarah Kovalaskas, James K. Rilling, John Lindo. Comparative analyses of the Pan lineage reveal selection on gene pathways associated with diet and sociality in bonobos. Genes, Brain and Behavior. 2020;e12715.

2018 John Lindo, Randall Haas, Courtney Hofman, Mario Apata, Mauricio Moraga, Ricardo A. Verdugo, James T. Watson, Carlos Viviano Llave, David Witonsky, Cynthia Beall , Christina Warinner , John Novembre , Mark Aldenderfer , Anna Di Rienzo The genetic prehistory of the Andean highlands 7000 years BP through European contact. Science Advances 2018; 4 : eaau4921.

2018 Lindo, J., Rogers, M., Mallot, E., Petzelt, B. Mitchell, J., Archer, D., Cybulski, J., Malhi, R., DeGiorgio, M.                         Patterns of Genetic Coding Variation in a Native American Population before and after European Contact.                                       American Journal of Human Genetics 102: 806-815.

2018 Scheib et al.                                                                                                                                                                             Ancient human parallel lineages within North America contributed to a coastal expansion.                                                               Science 360:1024-1027.

2017 Lindo, J., Kemp, B., Cybulski, J., DeGiorgio, M., Malhi, R.                                                                                                   Ancient individuals from the North American Northwest Coast reveal 10,000 years of regional genetic continuity.                     Proceedings of the National Academy of Sciences, 114, 4093-4098.

 2017 Kar, R. and Lindo, J.
Race and the Law in the Genomic Age: A Problem for Equal Treatment Under the Law.                                                                        The Oxford Handbook on Law, Regulation, and Technology

 2016 Lindo, J., Huerta-Sánchez, E., Nakagome, S., Rasmussen, R., Petzelt, B., Mitchell, J., Willerslev, E., DeGiorgio, M., Malhi, R.      A time transect of exomes from a Native American population before and after European contact.                                                    Nature Communications 7, 13175.

 2015 Kemp, B., Lindo, J., Bolnick, D., Malhi, R., Chatters, J.
Response to Comment on “Late Pleistocene human skeleton and mtDNA link Paleoamericans and modern Native Americans.”              Science 347, 835.

 2015 Raghavan, M., Steinrücken, M., Harris, K., … Lindo, J. … Song, Y., Nielsen, R., Willerslev, E.                                          Genomic evidence for the Pleistocene and recent population history of Native Americans.                                                                 Science 349, 1-20.

2015 Motti, J., Hagelberg, E., Lindo, J., Malhi, R., Bravi, C., Guichon, R.
First Complete Mitochondrial Genome Sequence from Human Skeletal Remains of the Coast of Santa Cruz, Argentina.               Magallania 43:119-131.